For graduate students and educators, traditional toolkits are effectively a "black box." PyChem-Pro changes that. Because it is pure Python, a student can Ctrl+Click into any file in the repository to ...

Trypanosoma brucei is the causal agent of African trypanosomiasis in humans and animals, the latter resulting in significant negative economic impacts in afflicted areas of the world. Resistance has ...

📢 Update (May 2025): Our manuscript, Automatic biomarker discovery and enrichment with BRAD, is now published in Bioinformatics. BRAD is a digital assistant designed to streamline bioinformatics ...

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. Programming is a key transferable skill within the chemical sciences with applications ...

Microbiome samples are routinely processed by means of low-cost, high-throughput metagenomics DNA sequencing, followed by the creation of microbial community abundance profiles (Calle, 2019), where ...

Unfortunately, Java-based and Python-based programs do not work together or share data seamlessly. Without the ability to easily exchange data between Python and ImageJ, features must be ...

Microeukaryotes (protists) serve fundamental roles in the marine environment as contributors to biogeochemical nutrient cycling and ecosystem function. Their activities can be inferred through ...

Functional enrichment analysis is an analytical method to extract biological insights from gene expression data, popularized by the ever-growing application of high-throughput techniques. Typically, ...

The modern researcher is confronted with hundreds of published methods to interpret genetic variants. There are databases of genes and variants, phenotype-genotype relationships, algorithms that score ...

The development of high-throughput sequencing technologies over the past decade has generated a tidal wave of environmental sequence information from a variety of natural and human engineered ...