A statistical model and MCMC algorithm tailored to single-cell copy number profiling from shallow whole-genome DNA sequencing data. SCICoNE reconstructs the history of copy number events in the tumour ...
perSVade runs structural variation (SV), small variant (SNPs and IN/DELs) and read depth-based Copy Number Variation (CNV) calling and annotation for WGS datasets. The only required input is a set of ...
We introduce PyClone, a statistical model for inference of clonal population structures in cancers. PyClone is a Bayesian clustering method for grouping sets of deeply sequenced somatic mutations into ...
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