We analysed differential enrichment using the DEP2 R package (v.0.4.8.24) 50 according to the authors’ tutorial page. In brief, we first selected proteins detected in all replicates of at least one ...
PepFun is a compilation of bioinformatics and chemoinformatics functionalities that are easy to implement and personalize for studying peptides at different levels: sequence, structure and large ...
G-F Score and AUC/F1 sourced from results/gf_scores.json and results/metric_comparison.json (11 methods, same run).
Department of Chemistry, Department of Biomolecular Chemistry and National Center for Quantitative Biology of Complex Systems, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States ...
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