The rest of the loaded packages are for data visualization only (some nice colors in graphs). To plot a pathway, we can model the pathway as a network, or a "graph" in graph theory. In mathematics, a ...
What is a Structural Topic Model? A Structural Topic Model is a general framework for topic modeling with document-level covariate information, which can improve inference and qualitative ...
https://doi.org/10.1080/21642850.2018.1521283 PMID: 34040834 PMCID: PMC8114409 Objective: The present paper presents a brief overview on network analysis as a ...
SCANPY is a scalable toolkit for analyzing single-cell gene expression data. It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential ...
The past decade has been marked with a proliferation of community detection algorithms that aim to organize nodes (e.g., individuals, brain regions, variables) into modular structures that indicate ...
TissueMiner: A multiscale analysis toolkit to quantify how cellular processes create tissue dynamics
Segmentation and tracking of cells in long-term time-lapse experiments has emerged as a powerful method to understand how tissue shape changes emerge from the complex choreography of constituent cells ...
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