Transposable elements are repetitive and mobile DNA segments that can be found in virtually all organisms investigated to date. Their complex structure and variable nature are particularly challenging ...

Abstract: We propose QGENE, a quantum-enhanced framework for approximate string matching used to perform local DNA sequence alignment. QGENE is a dynamic programming model with recursive functions ...

parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. Here, ...

This package contains Python bindings for parasail. Parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise ...

This important study addresses the problem of detecting weak similarity between protein sequences, a procedure commonly used to infer homology or assign putative functions to uncharacterized proteins.

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. Analyzing the similarity of protein interfaces in protein-protein interactions gives ...

Current methods of assessing the similarity between proteins are based on protein sequence alignment. However, alignment is ineffective for intrinsically disordered regions (IDRs) given their rapid ...

This work presents the application of protein language models in combination with current methods for the detection of distant evolutionary relationships. While the results are important, they are ...

When he first ran for village trustee in 2009, Brian Smith was a registered Republican. When he ran again two years later to succeed Jon Siegel as mayor, he again did so as a Republican. “I ran as a ...