C&EN

Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics

School of Biological Sciences, University of Oklahoma, Norman, Oklahoma 73019-0390, United States School of Biological Sciences, University of Oklahoma, Norman, Oklahoma 73019-0390, United States ...
GitHub

Theoretical Microbial Ecology Computational Tools

MicroEcoTools is an R package developed for microbial ecologists to apply ecological frameworks to microbial community data. This package helps analyze the effects of disturbances on microbial ...
The Lancet

Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model

aDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA bDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, USA ...
PNAS

sccomp: Robust differential composition and variability analysis for single-cell data

Determining changes in the composition of cell populations is made possible by technologies like single-cell transcriptomics, CyTOF, and microbiome sequencing. However, existing methods for ...
Frontiers

The Poisson-Lognormal Model as a Versatile Framework for the Joint Analysis of Species Abundances

Joint Species Distribution Models (JSDM) have received a lot of attention in the last decade as they provide a general multivariate framework to study the joint abundances of all species from a ...
Frontiers

Inferring Regulatory Networks From Mixed Observational Data Using Directed Acyclic Graphs

Identification of differentially expressed genes associated with disease has become an instrumental approach, but with only limited success in mechanistic discovery, partly due to the fact that ...