Abstract: Query-by-Example Spoken Term Detection (QbE-STD) retrieves relevant audio files corresponding to a spoken query, without relying on explicit word-level textual transcriptions. In ...

Perhaps because I've been trying out so many of the latest tools, the number of files I have has increased abnormally. If this were physical, I might be living in a hoarder's house, creating and ...

Abstract: We present the first accelerated implementation of BWA-MEM, a popular genome sequence alignment algorithm widely used in next generation sequencing genomics pipelines. The ...

parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. Here, ...

This package contains Python bindings for parasail. Parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise ...

Extracellular matrices direct the formation of mineral constituents into self-assembled mineralized tissues. We investigate the protein and mineral constituents to better understand the underlying ...

Text similarity is a fundamental concept in natural language processing (NLP) that measures how similar two pieces of text are. This measure is crucial in various applications, such as search engines, ...

This important study addresses the problem of detecting weak similarity between protein sequences, a procedure commonly used to infer homology or assign putative functions to uncharacterized proteins.

This study provides a valuable computational tool for analyzing and deconvoluting a pool of plasmids sequenced without barcoding using nanopore long-read sequencing. While the authors provide ...

Sequence alignment is a key component of bioinformatics pipelines to study the structures and functions of proteins, and to annotate open reading frames in newly sequenced genomes and metagenomes 1.

To evaluate the result generated by the ZSDP approach against standard sequence alignments, we compared the genome annotation files with RNA-seq results using Cufflinks v2.2.1 (Trapnell et al., 2012).