GitHub

parasail: Pairwise Sequence Alignment Library

parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. Here, ...
GitHub

The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.

Order the book at https://www.wiley.com/en-us/Machine+Learning+and+Big+Data+with+KDB%2B+Q-p-9781119404750. We have added .quantQ.math namespace with various ...
IEEE

Pip-SW: Pipeline Architectures for Accelerating Smith-Waterman Algorithm on FPGA Platforms

Abstract: The Smith-Waterman algorithm, which is founded on a dynamic programming approach, serves as a precise tool for aligning biological sequences. Despite its utility, the algorithm grapples with ...
Frontiers

Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy

To evaluate the result generated by the ZSDP approach against standard sequence alignments, we compared the genome annotation files with RNA-seq results using Cufflinks v2.2.1 (Trapnell et al., 2012).
Independent.ie

The Apprentice: Double blow as Selina Waterman Smith fired and Scott Saunders quits

It was a double shock on The Apprentice this week as resident 'pantomime villain' Selina Waterman Smith was fired and Scott Saunders sensationally quit the show. Week nine saw the eight remaining ...
Scientific Research Publishing

Comparative Study of the Parallelization of the Smith-Waterman Algorithm on OpenMP and Cuda C ()

1 Laboratoire de Mathématiques et Informatique (LAMI), Université de Ouagadougou, Ouagadougou, Burkina Faso. 2 Département de Mathmatiques et Informatique, Université de Ouagadougou, Ouagadougou, ...
Nature

3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets

Off-target gene silencing can present a notable challenge in the interpretation of data from large-scale RNA interference (RNAi) screens. We performed a detailed analysis of off-targeted genes ...